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Lab Applied Bioinformatics BIOL441 Fall 2023 (4 credit)
Lab Applied-Bioinformatics-fall2023 (2 students) *Graduate Class (Masters & Ph.D. Level): https://www.claflin.edu/ Claflin University, Orangeburg, South Carolina, United States of America. https://www.claflin.edu/academics-research/schools-departments/school-of-natural-sciences-and-mathematics/department-of-mathematics-computer-science/computer-science

January  9 2023.

This is the class content for BIOL441. The Github link is Here

Bioinformatics: 

https://youtu.be/G6Xh9QJQrjA

https://youtu.be/UlU8GlZP7GU

https://youtu.be/YVMVhcDCMY8

https://youtu.be/OTGJ4355zCQ

https://youtu.be/EYZgSvCS858

https://youtu.be/kGaQ2mG4-9g

https://youtu.be/kIxlNUeG-38

https://youtu.be/bmWCnSMhUDk

https://youtu.be/7UOA1hC2V5k

Phylogenetic Analysis: https://youtu.be/IMIP4la-K84

Semester class review: https://youtu.be/Pju8ecWWRAw

https://youtu.be/UEsXMfE_7Rg

GitHub: https://github.com/spawar2/BTEC-620-Spring-2023

Bioinformatics (topics including sequence alignment algorithms, scoring matrices, microarray analysisphylogenetic analysisbootstrapping, tree building, secondary & tertiary structure prediction, homology modeling, and protein folding)], visualization: heat maps, volcano plots, pie charts, Sequence alignments (Margaret Dayhoff, PAM, blossom scoring matrices, global & local alignment). Gene Expression Omnibus (GEO) datasets mining, Microarray data analysis: Read, Pre-processing/Normalization (Affy, Oligo, Limma-RMA, Quantile, Mas5.0), Visualization: Heat maps, box plots, Fold change expression analysis, Gene Set Enrichment Analysis (GSEA), Pathways and protein downstream interactome analysis. File formats (Fasta, etc.). National Center for Biotechnology Information (NCBI)  Basic Local Alignment Search Tool (BLAST) techniques, Sequence alignments (Margaret Dayhoff, PAM, Blossom scoring matrices, global & local alignment): https://youtu.be/Lx1jkr3UKwA

https://campuspress.yale.edu/shrikantpawar/files/2024/05/Student-Evaluations-2021-2024-3df60a3eaf357f31.pdf

Doing Homework

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WorldS4 2023

WorldS4 2023

08:15
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Madhuhas-Stanford-Testimonial

Madhuhas-Stanford-Testimonial

02:27
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K-Fold Semi-Supervised-Video

K-Fold Semi-Supervised-Video

03:43
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Student Testimonial - Anika Agrawal

Student Testimonial - Anika Agrawal

02:04
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FINAL POWERPOINT

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