Applied Bioinformatics BIOL441 Fall 2023 (4 credit)
Applied Bioinformatics Fall 23 (2 students) *Graduate Class (Masters & Ph.D. Level):
January 9 2023
This is the class content for BIOL441. The Github link is Here
Bioinformatics:
Phylogenetic Analysis: https://youtu.be/IMIP4la-K84
Github: https://github.com/spawar2/BTEC-620-Spring-2023
Bioinformatics (topics including sequence alignment algorithms, scoring matrices, microarray analysis, phylogenetic analysis, bootstrapping, tree building, secondary & tertiary structure prediction, homology modeling, and protein folding)], visualization: heat maps, volcano plots, pie charts, Blast, Sequence alignments (Margaret Dayhoff, PAM, blossom scoring matrices, global & local alignment).Gene Expression Omnibus (GEO) datasets mining, Microarray data analysis: Read, Pre-processing/Normalization (Affy, Oligo, Limma-RMA, Quantile, Mas5.0), Visualization: Heat maps, box plots, Fold change expression analysis, Gene Set Enrichment Analysis (GSEA), Pathways and protein downstream interactome analysis.
Sequence alignments (Margaret Dayhoff, PAM, Blossom scoring matrices, global & local alignment): https://youtu.be/Lx1jkr3UKwA
All Videos
All Videos
WorldS4 2023
Madhuhas-Stanford-Testimonial
K-Fold Semi-Supervised-Video
