Applied Bioinformatics BIOL441 Fall 2024 (4 credit) (5 students) *Graduate Class (Masters & Ph.D. Level): https://www.claflin.edu/ Claflin University, Orangeburg, South Carolina, USA
January 9 2023
This is the class content for BIOL441. The Github link is Here
Bioinformatics:
Phylogenetic Analysis: https://youtu.be/IMIP4la-K84
Github: https://github.com/spawar2/BTEC-620-Spring-2023
Bioinformatics (topics including sequence alignment algorithms, scoring matrices, microarray analysis, phylogenetic analysis, bootstrapping, tree building, secondary & tertiary structure prediction, homology modeling, and protein folding)], visualization: heat maps, volcano plots, pie charts, Blast, Sequence alignments (Margaret Dayhoff, PAM, blossom scoring matrices, global & local alignment).Gene Expression Omnibus (GEO) datasets mining, Microarray data analysis: Read, Pre-processing/Normalization (Affy, Oligo, Limma-RMA, Quantile, Mas5.0), Visualization: Heat maps, box plots, Fold change expression analysis, Gene Set Enrichment Analysis (GSEA), Pathways and protein downstream interactome analysis.
Sequence alignments (Margaret Dayhoff, PAM, Blossom scoring matrices, global & local alignment): https://youtu.be/Lx1jkr3UKwA
![Doing Homework](https://static.wixstatic.com/media/11062b_51bcacf60955483993c855f28b3fd283~mv2.jpg/v1/crop/x_761,y_0,w_2146,h_2240/fill/w_460,h_480,al_c,q_80,usm_0.66_1.00_0.01,enc_auto/Doing%20Homework.jpg)
All Videos
All Videos
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WorldS4 2023
![Madhuhas-Stanford-Testimonial](https://static.wixstatic.com/media/81dd80_2e0a97347fef480ab4b41ff3338a2cc5f002.jpg/v1/fill/w_153,h_86,enc_auto/file.jpeg 1x, https://static.wixstatic.com/media/81dd80_2e0a97347fef480ab4b41ff3338a2cc5f002.jpg/v1/fill/w_305,h_172,enc_auto/file.jpeg 2x)
Madhuhas-Stanford-Testimonial
![K-Fold Semi-Supervised-Video](https://static.wixstatic.com/media/81dd80_527fa1ded0394bfd82993652acfa5606f002.jpg/v1/fill/w_153,h_86,enc_auto/file.jpeg 1x, https://static.wixstatic.com/media/81dd80_527fa1ded0394bfd82993652acfa5606f002.jpg/v1/fill/w_305,h_172,enc_auto/file.jpeg 2x)
K-Fold Semi-Supervised-Video
![Student Testimonial - Anika Agrawal](https://static.wixstatic.com/media/81dd80_ecaecdeccee94859900e3a7541ba1a3ff002.jpg/v1/fill/w_153,h_86,enc_auto/file.jpeg 1x, https://static.wixstatic.com/media/81dd80_ecaecdeccee94859900e3a7541ba1a3ff002.jpg/v1/fill/w_305,h_172,enc_auto/file.jpeg 2x)